DNA hybridization catalysts and catalyst circuits

Practically all of life's molecular processes, from chemical synthesis to replication, involve enzymes that carry out their functions through the catalysis of metastable fuels into waste products. Catalytic control of reaction rates will prove to be as useful and ubiquitous in DNA nanotechnology as it is in biology. Here we present experimental results on the control of the decay rates of a metastable DNA "fuel". We show that the fuel complex can be induced to decay with a rate about 1600 times faster than it would decay spontaneously. The original DNA hybridization catalyst [15] achieved a maximal speed-up of roughly 30. The fuel complex discussed here can therefore serve as the basic ingredient for an improved DNA hybridization catalyst. As an example application for DNA hybridization catalysts, we propose a method for implementing arbitrary digital logic circuits

Two-Boson Exchange Physics: A Brief Review

Current status of the two-boson exchange contributions to elastic electron-proton scattering, both for parity conserving and parity-violating, is briefly reviewed. How the discrepancy in the extraction of elastic nucleon form factors between unpolarized Rosenbluth and polarization transfer experiments can be understood, in large part, by the two-photon exchange corrections is discussed. We also illustrate how the measurement of the ratio between positron-proton and electron-proton scattering can be used to differentiate different models of two-photon exchange. For the parity-violating electron-proton scattering, the interest is on how the two-boson exchange (TBE), \gamma Z-exchange in particular, could affect the extraction of the long-sought strangeness form factors. Various calculations all indicate that the magnitudes of effect of TBE on the extraction of strangeness form factors is small, though can be large percentage-wise in certain kinematics.Comment: 6 pages, 5 figures, prepared for Proceedings of the fifth Asia-Pacific Conference on Few-Body Problems in Physics (APFB2011), Seoul, Korea, August 22-26, 2011, to appear in Few-Body Systems, November 201

Finite temperature phase diagram of spin-1/2 bosons in two-dimensional optical lattice

We study a two-species bosonic Hubbard model on a two-dimensional square lattice by means of quantum Monte Carlo simulations and focus on finite temperature effects. We show in two different cases, ferro- and antiferromagnetic spin-spin interactions, that the phase diagram is composed of solid Mott phases, liquid phases and superfluid phases. In the antiferromagnetic case, the superfluid (SF) is polarized while the Mott insulator (MI) and normal Bose liquid (NBL) phases are not. On the other hand, in the ferromagnetic case, none of the phases is polarized. The superfluid-liquid transition is of the Berezinsky-Kosterlitz-Thouless type whereas the solid-liquid passage is a crossover.Comment: 9 pages, 13 figure

A jump-growth model for predator-prey dynamics: derivation and application to marine ecosystems

This paper investigates the dynamics of biomass in a marine ecosystem. A stochastic process is defined in which organisms undergo jumps in body size as they catch and eat smaller organisms. Using a systematic expansion of the master equation, we derive a deterministic equation for the macroscopic dynamics, which we call the deterministic jump-growth equation, and a linear Fokker-Planck equation for the stochastic fluctuations. The McKendrick--von Foerster equation, used in previous studies, is shown to be a first-order approximation, appropriate in equilibrium systems where predators are much larger than their prey. The model has a power-law steady state consistent with the approximate constancy of mass density in logarithmic intervals of body mass often observed in marine ecosystems. The behaviours of the stochastic process, the deterministic jump-growth equation and the McKendrick--von Foerster equation are compared using numerical methods. The numerical analysis shows two classes of attractors: steady states and travelling waves.Comment: 27 pages, 4 figures. Final version as published. Only minor change

Coherent matter wave inertial sensors for precision measurements in space

We analyze the advantages of using ultra-cold coherent sources of atoms for matter-wave interferometry in space. We present a proof-of-principle experiment that is based on an analysis of the results previously published in [Richard et al., Phys. Rev. Lett., 91, 010405 (2003)] from which we extract the ratio h/m for 87Rb. This measurement shows that a limitation in accuracy arises due to atomic interactions within the Bose-Einstein condensate

Determination of the Deep Inelastic Contribution to the Generalised Gerasimov-Drell-Hearn Integral for the Proton and Neutron

The virtual photon absorption cross section differences [sigma_1/2-sigma_3/2] for the proton and neutron have been determined from measurements of polarised cross section asymmetries in deep inelastic scattering of 27.5 GeV longitudinally polarised positrons from polarised 1H and 3He internal gas targets. The data were collected in the region above the nucleon resonances in the kinematic range nu < 23.5 GeV and 0.8 GeV**2 < Q**2 < 12 GeV**2. For the proton the contribution to the generalised Gerasimov-Drell-Hearn integral was found to be substantial and must be included for an accurate determination of the full integral. Furthermore the data are consistent with a QCD next-to-leading order fit based on previous deep inelastic scattering data. Therefore higher twist effects do not appear significant.Comment: 6 pages, 3 figures, 1 table, revte

Observation of a Coherence Length Effect in Exclusive Rho^0 Electroproduction

Exclusive incoherent electroproduction of the rho^0(770) meson from 1H, 2H, 3He, and 14N targets has been studied by the HERMES experiment at squared four-momentum transfer Q**2>0.4 GeV**2 and positron energy loss nu from 9 to 20 GeV. The ratio of the 14N to 1H cross sections per nucleon, known as the nuclear transparency, was found to decrease with increasing coherence length of quark-antiquark fluctuations of the virtual photon. The data provide clear evidence of the interaction of the quark- antiquark fluctuations with the nuclear medium.Comment: RevTeX, 5 pages, 3 figure

Measurement of the Neutron Spin Structure Function g1ng_1^n with a Polarized ^3He Target

Results are reported from the HERMES experiment at HERA on a measurement of the neutron spin structure function $g_1^n(x,Q^2)$ in deep inelastic scattering using 27.5 GeV longitudinally polarized positrons incident on a polarized $^3$He internal gas target. The data cover the kinematic range $0.023<x<0.6$ and $1 (GeV/c)^2 < Q^2 <15 (GeV/c)^2$. The integral $\int_{0.023}^{0.6} g_1^n(x) dx$ evaluated at a fixed $Q^2$ of $2.5 (GeV/c)^2$ is $-0.034\pm 0.013(stat.)\pm 0.005(syst.)$. Assuming Regge behavior at low $x$, the first moment $\Gamma_1^n=\int_0^1 g_1^n(x) dx$ is $-0.037\pm 0.013(stat.)\pm 0.005(syst.)\pm 0.006(extrapol.)$.Comment: 4 pages TEX, text available at http://www.krl.caltech.edu/preprints/OAP.htm

Comunidades de insectos fitófagos en árboles y lianas en el dosel y sotobosque del Parque Natural Metropolitano

The food and nutrient intake of Paleolithic hunter-gatherers (Homo erectus) and of Western populations (Homo economicus) show marked variations. With increase in wealth and affluence there is a decrease in the intake of omega-3 fatty acids, vitamins, antioxidants and amino acids and a significant increase in the intake of refined carbohydrates, fats (saturated & trans fats, omega-6 fatty acids) and salt in comparison with those of the Paleolithic period. The protein or amino acid intake was 2.5 fold greater (33 vs. 13%) in the Paleolithic diet of Homo erectus compared to that of the modern Western diet. Prior to the Agricultural Revolution, man's diet was based on an enormous variety of wild plants, eggs, fish and seeds. In comparison, today about 17% of plant species provide 90% of the world's food supply which is mainly contributed by grains produced from fertilizer-based rapidly grown crops potentially lower in nutrient density and higher in energy. Grains are high in omega-6 fatty acids and carbohydrates and low in omega-3 fatty acids and antioxidants compared to leafy green vegetables. The appropriate diet for Homo sapiens is characterized by high levels of protective essential nutrients; amino acids, minerals, vitamins, flavonoids, omega-6/3 fatty acids. Whereas the average diet of Homo erectus did comply with this evolutionary pattern, the modern Western dietary pattern of Homo economicus has excess of energy-rich refined carbohydrates, omega-6, trans and saturated fats. The consumption of such foods in wealthy countries in conjunction with sedentary behavior are associated with increased risk of deaths due to cardiovascular (CVDs) and other non-communicable diseases (NCDs). © Nova Science Publishers, Inc